rs28146639 SNP Detail

Summary

• ID
  rs28146639
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102618752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAATTGG TCAGAGAAGA
  AGCAGACAGC TCTATGTTGC CTTTGATTAT CTGTTTTCAC ATTGCAGGAT GGGGTAAAAC
  TCCTGGCCTT TCCTAAGATG ACAGGCAGAA ATTTTGGACC CAGGCTAGAT TTTATAATGC
  AGAACCTAGT GCATAATGGG TCTCAGATCA GCCACAGAAA TGTCAGAGGG GCCACCTAAA
  K
  CCAAGGTCTG TCCTACCAGT TGCCAATGGT CAATGGACCT TAGCAATTTA CCAAACTGGA
  ATAAAAGGGA GATGGTTTCA ACAAAACCAG TGAAGCTCCC CTTGTCTCTC CGCCACCCTC
  CTTTCCCCCT TCCCACCCCC CCCCCCCCGT CATCATGTCA AATGTCATTA GTGTGACTCC
  AGGGAGAGAA GAATTCTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38307561	NES09535306	PERLEGEN	MM_PANEL2	f	SNP	G			G	T	G	T		G	G	G	G	G	G
ss45567062	mCV23032803	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28146639					SNP	G	G	T	G	T	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307561	NES09535306	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102618752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	1990 bp distal
Cpgi14510	CpG island 14510	1069 bp distal
Rr596308	regulatory region 596308	1020 bp distal
Rr596309	regulatory region 596309	532 bp distal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	within coordinates
Tssr38069	transcription start site region 38069	1371 bp downstream
Tssr38070	transcription start site region 38070	1277 bp downstream
Tssr38071	transcription start site region 38071	1180 bp downstream