rs28146640 SNP Detail

Summary

• ID
  rs28146640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102618691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTACCAGC TTGCCCTTTC
  CAGTCTAAGA TAGTGACAGC CAACATCACC TCAGAAAAAG CAACAAATTG GTCAGAGAAG
  AAGCAGACAG CTCTATGTTG CCTTTGATTA TCTGTTTTCA CATTGCAGGA TGGGGTAAAA
  CTCCTGGCCT TTCCTAAGAT GACAGGCAGA AATTTTGGAC CCAGGCTAGA TTTTATAATG
  Y
  AGAACCTAGT GCATAATGGG TCTCAGATCA GCCACAGAAA TGTCAGAGGG GCCACCTAAA
  GCCAAGGTCT GTCCTACCAG TTGCCAATGG TCAATGGACC TTAGCAATTT ACCAAACTGG
  AATAAAAGGG AGATGGTTTC AACAAAACCA GTGAAGCTCC CCTTGTCTCT CCGCCACCCT
  CCTTTCCCCC TTCCCACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss38307562	NES09535305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs28146640					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307562	NES09535305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102618691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	1929 bp distal
Cpgi14510	CpG island 14510	1008 bp distal
Rr596308	regulatory region 596308	959 bp distal
Rr596309	regulatory region 596309	471 bp distal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	within coordinates
Tssr38069	transcription start site region 38069	1310 bp downstream
Tssr38070	transcription start site region 38070	1216 bp downstream
Tssr38071	transcription start site region 38071	1119 bp downstream