rs28146643 SNP Detail

Summary

• ID
  rs28146643
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102617873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT CTAGAACCTG GCTGCCAGGA
  W
  TTTTGCAAGC AGATACTGCA GCTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss38307565	NES09535302	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T	T	T	T	A
ss45618553	mCV23032805	ABI	CRAMUS_MOUSE	f	SNP		T	A			T
ss147134482	ENSMUSSNP6251266	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs28146643					SNP	T	T	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307565	NES09535302	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102617873 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	1111 bp distal
Cpgi14510	CpG island 14510	190 bp distal
Rr596308	regulatory region 596308	141 bp distal
Rr596309	regulatory region 596309	within coordinates
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	within coordinates
Tssr38069	transcription start site region 38069	492 bp downstream
Tssr38070	transcription start site region 38070	398 bp downstream
Tssr38071	transcription start site region 38071	301 bp downstream