rs28146645 SNP Detail

Summary

• ID
  rs28146645
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102616638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGG AGTGCGTGGG AGGAGGCGAC
  K
  CGCGCACGCC TGAGGCGGCC AACGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss38307567	NES09535300	PERLEGEN	MM_PANEL2	f	SNP	T			T		T	T	G	T	G
ss45708536	mCV23032815	ABI	CRAMUS_MOUSE	f	SNP		T	G		T
ss147134471	ENSMUSSNP1482153	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs28146645					SNP	T	T	G	T	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307567	NES09535300	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102616638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	within coordinates
Cpgi14510	CpG island 14510	603 bp proximal
Rr596308	regulatory region 596308	204 bp proximal
Rr596309	regulatory region 596309	1095 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	within coordinates
Tssr38069	transcription start site region 38069	723 bp upstream
Tssr38070	transcription start site region 38070	830 bp upstream
Tssr38071	transcription start site region 38071	853 bp upstream