rs28146647 SNP Detail

Summary

• ID
  rs28146647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102616332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTGCTC CCTACAGTGA
  TAGGCCTTCC TTACTCGATT CAATTTATTT CTTTTTGCTT TGTTTTAGCC TGGTTAAACC
  CAGGATCACA GGACACCAGG CCTGGGAGTC CCTCCCTTTG AAGGACTCCT AGGACTTTTG
  ATAGCACTCA GGTGACAGAC CCTCAGCTCC ACCAGACCTT GTGCCTGAAC CTTTCCCCAT
  Y
  CTAGCAAGTT GCCAAGGCCC AGGCTCCGCC CATTCCTCCA GCGCAACCTG GACCGATTGC
  CTTCCTCTCT GGATTTCCCT TGGGGTGAAC GACTGGGCTC CTAGGCGACT GAAGACTGCA
  GGAGGAGCGT CTTGCAAAAC CTGCCATGTA GCAGCGGCTT CAGTTGGCAG CTGTAGCCGA
  GGCTGCAAGC GAGGCTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss38307569	NES09535296	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs28146647					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307569	NES09535296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102616332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	within coordinates
Cpgi14510	CpG island 14510	909 bp proximal
Rr596308	regulatory region 596308	510 bp proximal
Rr596309	regulatory region 596309	1401 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	19 bp upstream
Tssr38069	transcription start site region 38069	1029 bp upstream
Tssr38070	transcription start site region 38070	1136 bp upstream
Tssr38071	transcription start site region 38071	1159 bp upstream