rs28146648 SNP Detail

Summary

• ID
  rs28146648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102616088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTTGAT TTTGACTAAT
  TCATCTCTTC GTTCGGCCTC TTTAGTATTT CATAGCCACC AATATCTCGT ATTCCCTCTG
  GAGGAAAGAA TCAGACTATG TCGAGATCTG GGTAATACTA AGTGAGGGTG TTATAAATGA
  TCAGCCCTAT TGTTAGTTTC TGACCTGATC TTCAATAAAG AGATTTTCAT AGCCCCGGCT
  Y
  TGCTATTCTT CCTTAGTTTA AAGACCTTTC TCTAGCCTTT TCATCATCTG CTCCCTACAG
  TGATAGGCCT TCCTTACTCG ATTCAATTTA TTTCTTTTTG CTTTGTTTTA GCCTGGTTAA
  ACCCAGGATC ACAGGACACC AGGCCTGGGA GTCCCTCCCT TTGAAGGACT CCTAGGACTT
  TTGATAGCAC TCAGGTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss38307570	NES09535295	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs28146648					SNP	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307570	NES09535295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102616088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	212 bp proximal
Cpgi14510	CpG island 14510	1153 bp proximal
Rr596308	regulatory region 596308	754 bp proximal
Rr596309	regulatory region 596309	1645 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	263 bp upstream
Tssr38069	transcription start site region 38069	1273 bp upstream
Tssr38070	transcription start site region 38070	1380 bp upstream
Tssr38071	transcription start site region 38071	1403 bp upstream