rs28146652 SNP Detail

Summary

• ID
  rs28146652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102615643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATAACTG GCCTCTGTTC
  TCAGACCTCA ATGAAGAAGA GACAGGATTC CATTTCATTG TTTGATACCA GTCTCCATCC
  CTGTTGTTAA TCTTCATTAA AATAATTTGC TAATCACACA CACACACACA CACACACACA
  CACACACACA CACACACACA CACATCCTTT ATTCAATAAC CCACCACAGT TTTTAGAGCC
  R
  ATCAACTTGC CCTTAAGACA AGTGTTACTT TGTAATCTCT TCCTTTTAAA ACTCTACGGC
  CTCATAGGCC TCGGGAAAAA GCCACGAGCA TGTATAGCTC TCAGGAGACT TTAATGTTTA
  AATGCAGAAG CCACAGAAAG ATGGATCCTT GTGGGAAAAC AATGAGGCTT TTAAAAATTA
  TTATTATTGC TATTATCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38307574	NES09535286	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28146652					SNP	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307574	NES09535286	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102615643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	657 bp proximal
Cpgi14510	CpG island 14510	1598 bp proximal
Rr596308	regulatory region 596308	1199 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	708 bp upstream
Tssr38069	transcription start site region 38069	1718 bp upstream
Tssr38070	transcription start site region 38070	1825 bp upstream
Tssr38071	transcription start site region 38071	1848 bp upstream