rs28146654 SNP Detail

Summary

• ID
  rs28146654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102615508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATGGT CTTAGGTAAC
  CACTGCCATT TGACCTACAA AAGGGTCACG GCCCACAGGC TGAGAACCAC TGGTTTATAG
  GCTTGTGGAC TTATTCTAAC TTCCATTTTA TAGGTAAGAA GCCAAAGTCC AGAGTTGTAT
  AACTGGCCTC TGTTCTCAGA CCTCAATGAA GAAGAGACAG GATTCCATTT CATTGTTTGA
  Y
  ACCAGTCTCC ATCCCTGTTG TTAATCTTCA TTAAAATAAT TTGCTAATCA CACACACACA
  CACACACACA CACACACACA CACACACACA CACACACATC CTTTATTCAA TAACCCACCA
  CAGTTTTTAG AGCCAATCAA CTTGCCCTTA AGACAAGTGT TACTTTGTAA TCTCTTCCTT
  TTAAAACTCT ACGGCCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss38307576	NES09535283	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs28146654					SNP	T	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307576	NES09535283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102615508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	792 bp proximal
Cpgi14510	CpG island 14510	1733 bp proximal
Rr596308	regulatory region 596308	1334 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	843 bp upstream
Tssr38069	transcription start site region 38069	1853 bp upstream
Tssr38070	transcription start site region 38070	1960 bp upstream
Tssr38071	transcription start site region 38071	1983 bp upstream