rs28149843 SNP Detail

Summary

• ID
  rs28149843
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102835441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGAGTC CCGATGCTAA
  TTACCGTCCT AGCTCCGGCG GACCAAGAGA ACATTTGTCA AGCATCCTGC TGTATTCTGT
  GGGCGGCGTC CTGTCTTCGT TCCTAAATAC CTTCACCACA GCGCTTCTGC AGCTTCAGTA
  GTCTGGGGTC CTCCGAGGGC TTGAAGGAGC GCAGCCTGCT TCTGTAACCA GCAGAGTTTT
  W
  AATCCTGTGC TCCTAGGTGC GTCCTTTAAC GTTCTAGTTC TCGGTGAGCT ACTTCTATAA
  AATCATTTTG TGACAGAGTT TTGTGGCAAC TGAACGGCTG CACAGCATCT GTTAGCAGCG
  GGGGGGGGGG GGGGGGTGAA GAGTGTGGGG GGGGGGGATG TGGGAGGGGG AATGGGCAGC
  TTCTAAGTCT TCAGGTCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38306462	NES09524694	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28149843					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38306462	NES09524694	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102835441 () rs orientation: forward

Symbol	Name	Function Class
Dynlt5	dynein light chain Tctex-type 5	459 bp upstream
Gm12709	predicted gene 12709	within coordinates
Rr83600	regulatory region 83600	1360 bp proximal
Rr95622	regulatory region 95622	1270 bp distal
Rr99654	regulatory region 99654	within coordinates
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	818 bp downstream
Tssr38075	transcription start site region 38075	447 bp upstream