rs28150130 SNP Detail

Summary

• ID
  rs28150130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107564746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGAAGGG ACAAAGGCTG
  GCCTGGCAGG TAGGGGGCAG TCCTAAGGGA AAACGCAGAA CGCCTGCTGG CCATTGATAC
  TTTGGTTTGC CTGATGCCCT CACTGCAGGG TCCCACCCCA TCCATACTGG CTGTTTAGTA
  AGGATTAGTT CAGGGCTTCC CCCTGAAGGC ACTGTGTATG CTAACACAGT GGCAGAGCCA
  R
  GGGCATAGCA GGGACAGGCC TGGGTAAGAT GGTTGATTTG GACTGACTGC AGGTGAACAC
  TGTGCCTCTA GACTTCATTC GGCTTTCACA GGGTCTTCAA GACATGCCTT GCATCGACAA
  GGGCAGGACT GGCCTAGATG GGGCTGTTTC TGCCTGTGCC CATTCTCTCT GCCCTATACC
  TGGTCACTTC TCCCTGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38283755	NES09509602	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	G	A	A	A		G	G	A	G		G
ss321250229	CHEV_4_107380154	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150130					SNP	A	A	A	G	A	G	G	A	A	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283755	NES09509602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107564746 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Tssr38261	transcription start site region 38261	501 bp downstream
Tssr38262	transcription start site region 38262	487 bp downstream
Tssr38263	transcription start site region 38263	477 bp downstream
Tssr38264	transcription start site region 38264	470 bp downstream
Tssr38265	transcription start site region 38265	450 bp downstream