rs28150138 SNP Detail

Summary

• ID
  rs28150138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107563673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACCAGCA GGATTAAAAA
  AAATTAAAAA AAAAAATCAA AGTCCTGAAG AAGACATTAA GTCCTCCCAC ATTTGAAGTT
  CTAGTTTGTA TCTCCTTGAA TGATTCCTCA ATAATCAACA GGCCATGAAC GTACTTCTCC
  CTCAACCTGT GTTACCTTCT TCCTTACCTT CATCTCTGTC ACTCTTCAGA AGTGCATTGA
  Y
  TCATCAAACA GAACTGGCTA CCCACTCTTG TTTATGTAGA ACACTACTAT TATTCAAATT
  GCTATGCTAC TCTAATATTA ACTTTCGGGG GACCCCTTCT TGTTTAGGGC TGAGGATACA
  GCTCAGCCGT AGAGTGCTTG CCCAGCTCTG CTGAGGCCCT CCCTGACTTC CAACGTCCAG
  GATCCTTGTC AGGAAGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38283763	NES09509576	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150138					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283763	NES09509576	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107563673 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Rr597045	regulatory region 597045	1992 bp distal
Tssr38261	transcription start site region 38261	554 bp upstream
Tssr38262	transcription start site region 38262	580 bp upstream
Tssr38263	transcription start site region 38263	590 bp upstream
Tssr38264	transcription start site region 38264	600 bp upstream
Tssr38265	transcription start site region 38265	618 bp upstream