rs28150139 SNP Detail

Summary

• ID
  rs28150139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107563590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAGGTG TGCGCCACCA
  CATGTGGCAG TGACCTGGGA TTTTTAATAA ACAGTCCAGG TGATCCTGAA ACAGATTGGT
  GTGTTCACCA GCAGGATTAA AAAAAATTAA AAAAAAAAAT CAAAGTCCTG AAGAAGACAT
  TAAGTCCTCC CACATTTGAA GTTCTAGTTT GTATCTCCTT GAATGATTCC TCAATAATCA
  R
  CAGGCCATGA ACGTACTTCT CCCTCAACCT GTGTTACCTT CTTCCTTACC TTCATCTCTG
  TCACTCTTCA GAAGTGCATT GATTCATCAA ACAGAACTGG CTACCCACTC TTGTTTATGT
  AGAACACTAC TATTATTCAA ATTGCTATGC TACTCTAATA TTAACTTTCG GGGGACCCCT
  TCTTGTTTAG GGCTGAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38283764	NES09509573	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss321250224	CHEV_4_107378998	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150139					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283764	NES09509573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107563590 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Rr597045	regulatory region 597045	1909 bp distal
Rr597046	regulatory region 597046	1994 bp distal
Tssr38261	transcription start site region 38261	637 bp upstream
Tssr38262	transcription start site region 38262	663 bp upstream
Tssr38263	transcription start site region 38263	673 bp upstream
Tssr38264	transcription start site region 38264	683 bp upstream
Tssr38265	transcription start site region 38265	701 bp upstream