rs28150142 SNP Detail

Summary

• ID
  rs28150142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107563066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAGTGGG TCAGAAGACT
  GTGATGACGT GGGCACAAGC ATGCCACGTG ACTGCGATGA CGTAGCACGC AAGCACACCA
  CATGGCTGAG ATGACAAAGC ACGCAGGCAC GCCGTGTAGC TGAGGTGACA AAGCATGCCT
  GCCCCCAATG ATTCATCTTA TTGCTTGTCA ACATTGGAAC AGCACCTCGC ACATAAGCCA
  Y
  GCCACCTTTC GCAGTTAGTG CATCTCTTGG TAAGTACTTA GCTCCTCCCA GAACCTTTAA
  AGATTCCTCC ACCCCTCACC GCCATATACT TCAGTTTCCA AACTTTGAAG TTTAATGAGG
  GATCCACCAA GAAGAGTGCT AAAATCTCAG ACCTGCCACC AAGAAATTCT CAGCCAGAAG
  TTTGGAGTAT GACCTGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38283767	NES09509752	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		T
ss321250217	CHEV_4_107378474	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150142					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283767	NES09509752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107563066 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	459 bp upstream
Gm70287	predicted gene, 70287	within coordinates
Rr597045	regulatory region 597045	1385 bp distal
Rr597046	regulatory region 597046	1470 bp distal
Tssr38261	transcription start site region 38261	1161 bp upstream
Tssr38262	transcription start site region 38262	1187 bp upstream
Tssr38263	transcription start site region 38263	1197 bp upstream
Tssr38264	transcription start site region 38264	1207 bp upstream
Tssr38265	transcription start site region 38265	1225 bp upstream