rs28150147 SNP Detail

Summary

• ID
  rs28150147
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107562853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTATGCTA AACACTTTAA
  CAGTAAATCT GCTCTCTCCA CCTCGCCTGC TTTTGTCTTC TATGAGGACA CAGCAAGCAG
  GGAGGGCCTT GTTAGATGGA AGAACCAGGC TCGTCAACTT CCTGGCTTCC AGAATCATGA
  GCCAAATGAA CTTCCATTTT ATTACAGATC ACGCCACCTC AGGAAACAGC TGAAAATAGA
  S
  GCGAACCCAG CATGTTAGTG GGTCAGAAGA CTGTGATGAC GTGGGCACAA GCATGCCACG
  TGACTGCGAT GACGTAGCAC GCAAGCACAC CACATGGCTG AGATGACAAA GCACGCAGGC
  ACGCCGTGTA GCTGAGGTGA CAAAGCATGC CTGCCCCCAA TGATTCATCT TATTGCTTGT
  CAACATTGGA ACAGCACCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38283772	NES09509747	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G	C		G
ss321250213	CHEV_4_107378261	CHEVERUD	SCREENING_POP	f	SNP										C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150147					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283772	NES09509747	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107562853 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	672 bp upstream
Gm70287	predicted gene, 70287	within coordinates
Rr597045	regulatory region 597045	1172 bp distal
Rr597046	regulatory region 597046	1257 bp distal
Tssr38261	transcription start site region 38261	1374 bp upstream
Tssr38262	transcription start site region 38262	1400 bp upstream
Tssr38263	transcription start site region 38263	1410 bp upstream
Tssr38264	transcription start site region 38264	1420 bp upstream
Tssr38265	transcription start site region 38265	1438 bp upstream