rs28150150 SNP Detail

Summary

• ID
  rs28150150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107562520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTACTGA GTGAGTGAAC
  AAATACATTT TCTCTCTCCC CTTTACATCA AAGGTTGCAT TGGCCAAGCT TGGTAGCTCA
  CACCTTTAAT CCCAGCACTC GGGAAACAGA AGCAGGTGGA TCTCTGAGTT CAAGGCCAGC
  CTGACCTACA GAGTGAGTTC CAGAACAGCA AAGCCACATA GAGAAATCCT GTCTGTGGGG
  R
  AAAAAAATAG TCTGGCTTTG TGGAAGGAAA GGTCTGCTTA GCGTATCAAT TCTTATCACT
  AAGAAGAACA CAGGACACTG TAACAGGTTG TGACAGGTTA ACGCTGGGAC TGTAGGGATG
  GGTTCGTTCG TGTCCTATGC TAAACACTTT AACAGTAAAT CTGCTCTCTC CACCTCGCCT
  GCTTTTGTCT TCTATGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38283775	NES09509776	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150150					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283775	NES09509776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107562520 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	1005 bp upstream
Gm70287	predicted gene, 70287	within coordinates
Rr597045	regulatory region 597045	839 bp distal
Rr597046	regulatory region 597046	924 bp distal
Tssr38261	transcription start site region 38261	1707 bp upstream
Tssr38262	transcription start site region 38262	1733 bp upstream
Tssr38263	transcription start site region 38263	1743 bp upstream
Tssr38264	transcription start site region 38264	1753 bp upstream
Tssr38265	transcription start site region 38265	1771 bp upstream