rs28150512 SNP Detail

Summary

• ID
  rs28150512
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108694187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCCGCT GTGTATTTAG
  AATAGAACTG TATATACAGA GGGAGACTGG AGTGCTAGGG TGTATGCAGA GCTGAGTTTC
  AATGTGTTCT GCCAGTGACC AGACGAGATG CCTGTGACAA GTAGCTTAAT CTCTCTCATG
  CCTCTGTTCC TCAGCTGCAA AATGGGTGTG ATTGTTACCC CAGACACTCA ACACATAACA
  W
  ACCCTGCTCA ATCGACTGTT GAATGCATAT AACATTATGA AGTGTTGTGT GAGTCTCATT
  TCTTTGTCAG GCAGTAAATA CTGTGTTATT CAATTAGCAT CATTGCCTAA TAAACAACTC
  CAAAATATAT TGAAGCCTTG AATCCCGGGA CTGGAGGTAG AAGCAGGCGA TCGGATCTCT
  GTGAGTTCCA GGGAACCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ
ss38279838	NES09494239	PERLEGEN	MM_PANEL2	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ
rs28150512					SNP	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279838	NES09494239	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108694187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14565	CpG island 14565	1850 bp distal
Rr376990	regulatory region 376990	1923 bp downstream
Rr597227	regulatory region 597227	979 bp proximal
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	within coordinates