rs28150514 SNP Detail

Summary

• ID
  rs28150514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108693936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG GAAGTGCTGA AAACTGCACA
  R
  TGGGTCCTAT TAAGTCAAAA TGTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	SM/J
ss38279840	NES09494260	PERLEGEN	MM_PANEL2	f	SNP	G			G	A
ss45644869	mCV23912954	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss147191157	ENSMUSSNP5911029	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321252878	CHEV_4_108509344	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	SM/J
rs28150514					SNP	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279840	NES09494260	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108693936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14565	CpG island 14565	1599 bp distal
Rr376990	regulatory region 376990	1672 bp downstream
Rr597227	regulatory region 597227	1230 bp proximal
Tssr38315	transcription start site region 38315	1988 bp downstream
Tssr38316	transcription start site region 38316	1932 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	within coordinates