rs28150516 SNP Detail

Summary

• ID
  rs28150516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108691817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACTCCCAC ATCCTTCTAC GTGATCTGCA CCTTTAAACT
  TACTCCATTC CAAAGCGGAC CCTCGAGGCA CCGCCCACAT CCGTCTAACA TCACTTCCTT
  Y
  AGTGTTTGGC TAGGAAAAAA AAAAAAAAAA AAAAATCTGG GAATCCGAGG GGTTGGGCTG
  AACGGCGATA AGGGGGCAGA GCGGAGCTTC TGCTGGAAAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ
ss38279842	NES09494485	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ
rs28150516					SNP	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279842	NES09494485	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108691817 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	1006 bp upstream
Cpgi14564	CpG island 14564	481 bp distal
Cpgi14565	CpG island 14565	42 bp proximal
Rr376990	regulatory region 376990	within coordinates
Rr597224	regulatory region 597224	1077 bp distal
Rr597225	regulatory region 597225	516 bp distal
Rr597226	regulatory region 597226	9 bp distal
Tssr38313	transcription start site region 38313	3 bp downstream
Tssr38314	transcription start site region 38314	27 bp upstream
Tssr38315	transcription start site region 38315	89 bp upstream
Tssr38316	transcription start site region 38316	182 bp upstream
Tssr42738	transcription start site region 42738	1023 bp upstream
Tssr42739	transcription start site region 42739	994 bp upstream
Tssr42740	transcription start site region 42740	366 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	58 bp upstream