rs28150517 SNP Detail

Summary

• ID
  rs28150517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108691704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG ATATCAAGGA CTTAGGGAAA
  R
  CAAACTCGAG ATGTACTCCC ACATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	SM/J
ss38279843	NES09494484	PERLEGEN	MM_PANEL2	f	SNP	A			G	G		G
ss45684911	mCV23912979	ABI	CRAMUS_MOUSE	f	SNP		A	A			G
ss147191121	ENSMUSSNP1769286	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			G
ss321252871	CHEV_4_108507112	CHEVERUD	SCREENING_POP	f	SNP								A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	SM/J
rs28150517					SNP	A	A	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279843	NES09494484	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108691704 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	893 bp upstream
Cpgi14564	CpG island 14564	368 bp distal
Cpgi14565	CpG island 14565	155 bp proximal
Rr376990	regulatory region 376990	within coordinates
Rr597224	regulatory region 597224	964 bp distal
Rr597225	regulatory region 597225	403 bp distal
Rr597226	regulatory region 597226	within coordinates
Tssr38313	transcription start site region 38313	103 bp upstream
Tssr38314	transcription start site region 38314	140 bp upstream
Tssr38315	transcription start site region 38315	202 bp upstream
Tssr38316	transcription start site region 38316	295 bp upstream
Tssr42738	transcription start site region 42738	910 bp upstream
Tssr42739	transcription start site region 42739	881 bp upstream
Tssr42740	transcription start site region 42740	253 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	171 bp upstream