rs28150519 SNP Detail

Summary

• ID
  rs28150519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108690356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCGCCAT TCACCAGCTG
  TGTAACACTG TGCCTGGCGA TCAATCATCA GGCAGTGTGA AGAGGTTATA AGGATAGGTA
  ACTGTCTCAA AATTAAGAGA GACTTGTAAA CAAGCACTTC TATTACAAAG TGAAGAGCGC
  TGCAACCTAG TTCGGCCCCA AGAGCTTGGT GGCCGGGTGC TAACCTCAGT TTGGGAGGAG
  Y
  AAAAGAGATG ACAACAGATC TGCTGCTCAA AGCGTCTGAC ACTGTTGTTG TGAATAATGA
  GTGATGGACG AGGAGGGTTC TACCCTCCTG GGTCTGGACC TGAGCGGCCA GAGCCCGGGC
  CCGGCTCCTC CACAGCGGGC GGTGGTGCTG GGGACCTTCC CTCAGGTGCC GACCCCCAGC
  TGCGCCGCCC GTAACCGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ
ss38279845	NES09494482	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ
rs28150519					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279845	NES09494482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108690356 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	within coordinates
Cpgi14564	CpG island 14564	within coordinates
Cpgi14565	CpG island 14565	1503 bp proximal
Rr376990	regulatory region 376990	within coordinates
Rr597224	regulatory region 597224	within coordinates
Rr597225	regulatory region 597225	385 bp proximal
Rr597226	regulatory region 597226	952 bp proximal
Tssr38313	transcription start site region 38313	1451 bp upstream
Tssr38314	transcription start site region 38314	1488 bp upstream
Tssr38315	transcription start site region 38315	1550 bp upstream
Tssr38316	transcription start site region 38316	1643 bp upstream
Tssr42738	transcription start site region 42738	385 bp downstream
Tssr42739	transcription start site region 42739	449 bp downstream
Tssr42740	transcription start site region 42740	1080 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	1519 bp upstream