rs28150520 SNP Detail

Summary

• ID
  rs28150520
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108689431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTTTGT GACTATTTGC
  ATTTTAGGTA ACATTCCTAA AGAAAAGAGT TGGCAGTTGG AAAGATAAGA CAAAAAGTCC
  AGACTTATTT GAAGCAAAAG CAAAGCCCAA ATTAACTCTT TCTTATGGTG TAAATGAAAG
  AATAATTCCA TTTCAGGTGG TCAGTATAAT TAAGAAATCT TATTCCTAAG GAGTATTTTA
  K
  GGAAAAGACA TAATTTTAGG GCATCTAGAA GCTTAAAGCA GCAGGGGAAG GAGAAATATG
  GCCTTTTGTC CAACAGCAAG TTGGGCTGTG TAGGATTCTA ATAGAAAAAG ACATTTAGAC
  TCAGCCTGAG ACCTAAAAGG TCACCTGGTT TAATCCCTAC TTAATATCTT TAATGTACCT
  GTCATTCTTG TTTCAAGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279847	NES09494480	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150520					SNP	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279847	NES09494480	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108689431 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	within coordinates
Cpgi14564	CpG island 14564	665 bp proximal
Rr376990	regulatory region 376990	565 bp upstream
Rr597224	regulatory region 597224	474 bp proximal
Rr597225	regulatory region 597225	1310 bp proximal
Rr597226	regulatory region 597226	1877 bp proximal
Tssr42738	transcription start site region 42738	1310 bp downstream
Tssr42739	transcription start site region 42739	1374 bp downstream