rs28150521 SNP Detail

Summary

• ID
  rs28150521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108689331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCCTTTGT GACTATTTGC ATTTTAGGTA ACATTCCTAA
  AGAAAAGAGT TGGCAGTTGG AAAGATAAGA CAAAAAGTCC AGACTTATTT GAAGCAAAAG
  Y
  AAAGCCCAAA TTAACTCTTT CTTATGGTGT AAATGAAAGA ATAATTCCAT TTCAGGTGGT
  CAGTATAATT AAGAAATCTT ATTCCTAAGG AGTATTTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279848	NES09494479	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C	C	C	T	C	T
ss147191102	ENSMUSSNP2147213	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150521					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279848	NES09494479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108689331 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	within coordinates
Cpgi14564	CpG island 14564	765 bp proximal
Rr376990	regulatory region 376990	665 bp upstream
Rr597224	regulatory region 597224	574 bp proximal
Rr597225	regulatory region 597225	1410 bp proximal
Rr597226	regulatory region 597226	1977 bp proximal
Tssr42738	transcription start site region 42738	1410 bp downstream
Tssr42739	transcription start site region 42739	1474 bp downstream