rs28150522 SNP Detail

Summary

• ID
  rs28150522
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108688980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GAAGCTGAAC TTAAAGAACT GACCTGTATA TATCGCAGCT
  GTAAGGCTGA ATCCATTTCA CAAATAAAAA TTAGAACCTA TGGCTTCTCA CTTTGTTCAA
  M
  ATTGTATCAC AATGGTCAAG CAGGTAAAAG CTTTTGCATG GGAGTTGTGT GTAGAATCCA
  AACAGTCTTT TAGGTGTGTG CCAATCTTAG CTGTGCAGCA G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279849	NES09494478	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	A		C	C	C	C
ss147191098	ENSMUSSNP3073453	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150522					SNP	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279849	NES09494478	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108688980 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	within coordinates
Cpgi14564	CpG island 14564	1116 bp proximal
Rr376990	regulatory region 376990	1016 bp upstream
Rr597224	regulatory region 597224	925 bp proximal
Rr597225	regulatory region 597225	1761 bp proximal
Tssr42738	transcription start site region 42738	1761 bp downstream
Tssr42739	transcription start site region 42739	1825 bp downstream