rs28150524 SNP Detail

Summary

• ID
  rs28150524
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108688577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGCACCC CAGTTTATTC
  TAGACCTTGC ACTGATAATG TCACACTCAA CAAGATATTA TTGCATCAGC GGCAAAATGT
  CTCACTGTAC TATTTGACAA AGATCAAATA GTATCTTGTT ACATTTGTAT CATGGTTACA
  TTAAGTTACT GGGCAAGACA AAAAAATAAG CTATGCAAAT TTTGACCTTT GAAGATTCTA
  M
  GGACATTCTA AAATCATGAA TTCTAGTCTT GACAGTGACA CTCCTGCTTT GGAAAACAAC
  ATACCATGCG CTAAAAAAAA AAAGCTAATT TAACAGTCTT GTTTGACTTG TTCTGTGGCT
  TAACAGATCA TTACTGAGAT GTGAAGGAGG GAATAAGGGA ATAGGCTATT ATTAAACTTT
  TTTTTTCCTA ATTCTAACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279851	NES09494476	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150524					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279851	NES09494476	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108688577 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	within coordinates
Cpgi14564	CpG island 14564	1519 bp proximal
Rr376990	regulatory region 376990	1419 bp upstream
Rr597224	regulatory region 597224	1328 bp proximal