rs28152189 SNP Detail

Summary

• ID
  rs28152189
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106481420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGGCTCTT GATACTTCGG CTGTTTTCTC ATTCTCAGAA
  ACATGTCACT GGGTCTGGCC TACACTGCAG GGGAAAGGGT TATACAGGTC AGAAATACCG
  K
  CAGGTAGGCT CACTGGGGGC TGCATGTCAC TGATGGAAGA GTGATGTGGG AATGTTATTC
  TCTTGAGCGC TATGCCCTGG CACAACACCA TTCCAAAGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38288716	NES09622723	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	G	T	G	G	T	T	G	G
ss45712159	mCV25122614	ABI	CRAMUS_MOUSE	f	SNP		T						G
ss147169178	ENSMUSSNP7017283	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28152189					SNP	T	T	T	T	T	T	G	G	T	G	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288716	NES09622723	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106481420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	990 bp distal
Rr596780	regulatory region 596780	1781 bp distal
Tssr38185	transcription start site region 38185	1746 bp downstream
Tssr38186	transcription start site region 38186	1712 bp downstream
Tssr38187	transcription start site region 38187	1681 bp downstream
Ttc22	tetratricopeptide repeat domain 22	within coordinates