rs28152190 SNP Detail

Summary

• ID
  rs28152190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106481242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATACTTG TCGTTTATCC TGCAGTACAA GAGTCCTATG
  TGCAGCAGCC TATACAATAA GCATTTACGA CTGAGCAGCC CTGGGATCTA GGTGTGGCTA
  Y
  GCTGTCCTCC CAAGGTTTGC CTGACTGGGG GCCATCTACA GCCACACCAG TTCATAATCG
  ACAGGGTATG GTTCCTAGCT GGCTCTTGAT ACTTCGGCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38288717	NES09622722	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28152190					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288717	NES09622722	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106481242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	812 bp distal
Rr596780	regulatory region 596780	1603 bp distal
Tssr38185	transcription start site region 38185	1568 bp downstream
Tssr38186	transcription start site region 38186	1534 bp downstream
Tssr38187	transcription start site region 38187	1503 bp downstream
Ttc22	tetratricopeptide repeat domain 22	within coordinates