rs28152197 SNP Detail

Summary

• ID
  rs28152197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCGGGGC CGCCCCATCC
  ACTGTCCTTG GGAGCTAGGG GAGGCCAGGG CAGTCAGGGG CAGCCATGAC GGAGGCCGAG
  GTCGGAGCCG AGGACCTGGA CACCCTTCTC GATGAACTGG ACTATCTGCC CGGCCACTTC
  CACCTGGAGA TGCAGCTCAA CTTCGAGCCG CGCTCACCCG CTCAGCTGCG CGCCCGGGAC
  Y
  TGAAGCTCCA GCGAGAGGGT CTGCGGCAGG AGCTGGAGCT GGTGGCCACC CCGCAGCTGC
  CTGCCGTGCG TCACCTCTTG GGAACCTTTT CCTTCTACCT GGAGGAGCTG GGTGATGCCC
  GCGAGCATTT CCTGGAAGTG GCCCGCAAAG ACCCTGGCAA CCTCAACGCC TGGGCCAATC
  TGGCACACGT CTACGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38288724	NES09622715	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	T	C	C	C	C		T	T	C	T		T
ss321246857	CHEV_4_106295291	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28152197					SNP	C	C	C	T	T	T	C	C	C	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288724	NES09622715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	within coordinates
Rr596780	regulatory region 596780	244 bp distal
Tssr38185	transcription start site region 38185	209 bp downstream
Tssr38186	transcription start site region 38186	175 bp downstream
Tssr38187	transcription start site region 38187	144 bp downstream
Ttc22	tetratricopeptide repeat domain 22	within coordinates