rs28152198 SNP Detail

Summary

• ID
  rs28152198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGCCCCG GACCGCCGTG
  CGGGGCTCCC TCCGGGGCCG CCCCATCCAC TGTCCTTGGG AGCTAGGGGA GGCCAGGGCA
  GTCAGGGGCA GCCATGACGG AGGCCGAGGT CGGAGCCGAG GACCTGGACA CCCTTCTCGA
  TGAACTGGAC TATCTGCCCG GCCACTTCCA CCTGGAGATG CAGCTCAACT TCGAGCCGCG
  Y
  TCACCCGCTC AGCTGCGCGC CCGGGACCTG AAGCTCCAGC GAGAGGGTCT GCGGCAGGAG
  CTGGAGCTGG TGGCCACCCC GCAGCTGCCT GCCGTGCGTC ACCTCTTGGG AACCTTTTCC
  TTCTACCTGG AGGAGCTGGG TGATGCCCGC GAGCATTTCC TGGAAGTGGC CCGCAAAGAC
  CCTGGCAACC TCAACGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38288725	NES09622714	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	T	C	C	C	C		C	T	C	C		C
ss321246856	CHEV_4_106295263	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28152198					SNP	C	C	C	T	T	T	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288725	NES09622714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	within coordinates
Rr596780	regulatory region 596780	216 bp distal
Tssr38185	transcription start site region 38185	181 bp downstream
Tssr38186	transcription start site region 38186	147 bp downstream
Tssr38187	transcription start site region 38187	116 bp downstream
Ttc22	tetratricopeptide repeat domain 22	within coordinates