rs28152200 SNP Detail

Summary

• ID
  rs28152200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCGCCGTG CGGGGCTCCC TCCGGGGCCG CCCCATCCAC
  TGTCCTTGGG AGCTAGGGGA GGCCAGGGCA GTCAGGGGCA GCCATGACGG AGGCCGAGGT
  Y
  GGAGCCGAGG ACCTGGACAC CCTTCTCGAT GAACTGGACT ATCTGCCCGG CCACTTCCAC
  CTGGAGATGC AGCTCAACTT CGAGCCGCGC TCACCCGCTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38288727	NES09622712	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28152200					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288727	NES09622712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	within coordinates
Rr596780	regulatory region 596780	126 bp distal
Tssr38185	transcription start site region 38185	91 bp downstream
Tssr38186	transcription start site region 38186	57 bp downstream
Tssr38187	transcription start site region 38187	26 bp downstream
Ttc22	tetratricopeptide repeat domain 22	within coordinates