rs28152201 SNP Detail

Summary

• ID
  rs28152201
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACACCT GCTTGTGCAA
  TGCTGCTGTC TAGCAGCGAA AGCGGAAACA CCTACAGGGC GAGCCCTTGG CCGGCTCTGG
  GTACCACCCA CTTGCAAGAG GTGCCCCGGA CCGCCGTGCG GGGCTCCCTC CGGGGCCGCC
  CCATCCACTG TCCTTGGGAG CTAGGGGAGG CCAGGGCAGT CAGGGGCAGC CATGACGGAG
  S
  CCGAGGTCGG AGCCGAGGAC CTGGACACCC TTCTCGATGA ACTGGACTAT CTGCCCGGCC
  ACTTCCACCT GGAGATGCAG CTCAACTTCG AGCCGCGCTC ACCCGCTCAG CTGCGCGCCC
  GGGACCTGAA GCTCCAGCGA GAGGGTCTGC GGCAGGAGCT GGAGCTGGTG GCCACCCCGC
  AGCTGCCTGC CGTGCGTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38288728	NES09622711	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	C	C	G	G	G	G		C	G	C		C
ss321246854	CHEV_4_106295165	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28152201					SNP	G	G	G	C	C	C	G	G	G	G	G	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288728	NES09622711	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	within coordinates
Rr596780	regulatory region 596780	118 bp distal
Tssr38185	transcription start site region 38185	83 bp downstream
Tssr38186	transcription start site region 38186	49 bp downstream
Tssr38187	transcription start site region 38187	18 bp downstream
Ttc22	tetratricopeptide repeat domain 22	within coordinates