rs28152202 SNP Detail

Summary

• ID
  rs28152202
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTGTG TGGAGGGTGG
  AGCATTGCCA ATGGAGGAAG GACTTGGCCG GCCTGGGCAA CCCGAGGCTC CAGGTCTCCT
  TGAGCTTGAC CTGGTTCTGT GACCTTGGCA CCTTTCTCTT CTGAACCTCT CTCTTCATCT
  GCTGAGTAGT CGAAATCTGC CCTTGCCACT TACTGGGTTT GTGAGCCTCC CGTTTGGCAA
  W
  GCACCACACC TGTTTTTCAG GCACACCTGC TTGTGCAATG CTGCTGTCTA GCAGCGAAAG
  CGGAAACACC TACAGGGCGA GCCCTTGGCC GGCTCTGGGT ACCACCCACT TGCAAGAGGT
  GCCCCGGACC GCCGTGCGGG GCTCCCTCCG GGGCCGCCCC ATCCACTGTC CTTGGGAGCT
  AGGGGAGGCC AGGGCAGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38288729	NES09622710	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	T	T	A	A	A	A		T	T	A	T		T
ss321246853	CHEV_4_106294946	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28152202					SNP	A	A	A	T	T	T	A	A	A	A	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288729	NES09622710	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	42 bp proximal
Rr596780	regulatory region 596780	within coordinates
Tssr38185	transcription start site region 38185	83 bp upstream
Tssr38186	transcription start site region 38186	145 bp upstream
Tssr38187	transcription start site region 38187	187 bp upstream
Ttc22	tetratricopeptide repeat domain 22	108 bp upstream