rs28153745 SNP Detail

Summary

• ID
  rs28153745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105156669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCCTCA GCGCCTCTGT
  GCTTCCGCCT GTTCCAGAAG CTGTCAGGTT CTCTGGCGCA CCCTCTCACC TGTTCAGACT
  AATTTCCTAA GTTCGGCGGG TCCCGGACCC TCACCTTCTT TTTCACTCTG CCGAGGGTTA
  GCTCTTTAAA TGGCATTGTC ATCCTGAGCA TGGGGATGTC TTTGCCAAGG GCCCTGGCAC
  Y
  GTCACTGAGC CTCCAGACCT CTCTGGGTCA CTGGCTACAG AGTACCTCAT TCCTGACAGA
  TCCTGGCACT TGTTAGCTGT GTGACATTGG TGAGGCACTT AAGCCTGACC TTCCTTGCAG
  ACAGTCTGGT TTACTCCCCA AACTGGGGCT CCAAAGTCCC TGGTGAAGCA TGTCACTGTT
  CTGGGTGAAG TGACATCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38294772	NES09513232	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	T		C	C	C	C		T
ss321243503	CHEV_4_104972077	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28153745					SNP	C	C	C	C	T	C	T	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38294772	NES09513232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105156669 () rs orientation: forward

Symbol	Name	Function Class
D4Mit306	DNA Segment, Chr 4, Massachusetts Institute of Technology 306	206 bp proximal
Rr596588	regulatory region 596588	within coordinates