rs28153963 SNP Detail

Summary

• ID
  rs28153963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105117537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG AGGGCACTGA GGCTGAAGAT
  R
  GAACAACGGC TCATCACAAA CTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38294991	NES09515208	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	A	G	G	G	G		G	G		G
ss321243332	CHEV_4_104932945	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28153963					SNP	G	G	G	A	A	A	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38294991	NES09515208	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105117537 () rs orientation: forward

Symbol	Name	Function Class
Gm54244	predicted gene, 54244	935 bp upstream
Rr596570	regulatory region 596570	1916 bp distal
Rr596571	regulatory region 596571	149 bp proximal
Rr596572	regulatory region 596572	565 bp proximal
Rr596573	regulatory region 596573	1937 bp proximal
Tssr38160	transcription start site region 38160	1781 bp downstream
Tssr38161	transcription start site region 38161	1718 bp downstream
Tssr38162	transcription start site region 38162	1009 bp upstream