rs28153966 SNP Detail

Summary

• ID
  rs28153966
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105113917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT GCCTCAAACT CTGTCATGTG
  K
  GTTTCTTTCC TTGTACCTGA CTGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38294994	NES09515342	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	T	T	G	G		G	G		T
ss321243319	CHEV_4_104929325	CHEVERUD	SCREENING_POP	f	SNP									G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28153966					SNP	G	G	G	T	T	T	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38294994	NES09515342	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105113917 () rs orientation: forward

Symbol	Name	Function Class
Rr596568	regulatory region 596568	1070 bp distal
Rr596569	regulatory region 596569	175 bp proximal
Rr596570	regulatory region 596570	1303 bp proximal
Tssr38159	transcription start site region 38159	379 bp upstream
Tssr38160	transcription start site region 38160	1817 bp upstream
Tssr38161	transcription start site region 38161	1894 bp upstream