rs28159955 SNP Detail

Summary

• ID
  rs28159955
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102280510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGTCAA AGGCAGGACA
  CAGCTCTTTG ACTTATGGCG GGTTTCTGTT CTTCCAGAAG AGTGCTGTGT GAACAATATA
  AGTGTAATTT CTAGCGAGTG AACATATTTT AAGAAGAGAA AGGTTGGATT AAGCTTTCTT
  TGATCACAAA TCCTCTTTGG GGATGAAGTG CTTTTGGAAG GTGAATGGGA GTCGCAGTTC
  R
  AGGAGTGGGA TCCCATTCCA ATGAGGCAAG ATGAACCTGA CCCATAAAGC CGGAAAGTCA
  AGCTCCCCAC TTGCCAGCTT GGGTGGGGGA GGACTCCAGT TTTCTTGGCT ATAAATGAGC
  TCCCAGGCCT TGCCTTAAAG TCTTGTGAAG CCTGAGGACT GATAAGAAGA GCCAGTGCAT
  GTCCTGGCAC AAATGAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38308981	NES09511336	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28159955					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38308981	NES09511336	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102280510 () rs orientation: forward

Symbol	Name	Function Class
Pde4b	phosphodiesterase 4B, cAMP specific	within coordinates
Rr596241	regulatory region 596241	1785 bp distal
Tssr38034	transcription start site region 38034	1740 bp downstream