rs28159960 SNP Detail

Summary

• ID
  rs28159960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102279898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACAAAAA TGATCACAGA
  CCAGAACCAA GCAGATACTT GTTGGTTTGA CGTGAATGAT TCGTGCCATT GAGCAACTCT
  GGCTTCATGT ACTCCAGTGG AATTTTACAT ATATTTTAAG CCTCAGCCTT GTTTACAGTG
  ATTCTAGAGG ATAGAAAGGA CGGTTGGCAT AATGACTTAC ACAGTATCTG GTGTGGGACT
  Y
  GTTACTGCAT TAACTTTTCA GCAACATTGA TGAGCAAATA CAGAAATCAC AGCACTCCAA
  TTCCTCATTT TGAATATAAT TAGTCCTCAT ATGTCCAACC ACAATTTTTC CTGATAACAT
  TTTTTTTTTA GAATTTAAGA GACATGAAAG GAAAAGAAAC TTAGAATTCT TATTATTCCC
  CCAAAATGTT GACTTTAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38308986	NES09511392	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28159960					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38308986	NES09511392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102279898 () rs orientation: forward

Symbol	Name	Function Class
Pde4b	phosphodiesterase 4B, cAMP specific	within coordinates
Rr596241	regulatory region 596241	1173 bp distal
Tssr38034	transcription start site region 38034	1128 bp downstream