rs28159963 SNP Detail

Summary

• ID
  rs28159963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102278565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCCCGT GTGTTAGGTG
  TTCTCTCGCC GTGTTCTGAA TGGGCTAAAC AATGCAGAAC GAGTCAGACA GGAGGTTCAA
  TAGCTCAAAA TGCAATGCAA AGGGTGGAAA GAGAAGAGAG ATCATTTGAT TAATGTGAGC
  ACTGTGAACT TCGGCTAAAA GAACACCACC ACCCCCCATA AGCTGACATA TCACCAGGCA
  Y
  AGGAGAGAAA ATACAGAGCA AGGGACAAAA TGAACACTGT TTAAAGGGGT GGTTTTCTGC
  AGTTTCGGAT ACTCAAATTC TTTGCTTCTC TGAGGTAAAC TGCACGCAGT GCTACACACC
  CCACGGGAGG CTCTCATGCT GATTTGGCTG CACGTCAATT TTCTCATCTG ATTTCTAAAG
  GAAGCTACTT GCGATGGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38308989	NES09511494	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C		T	T	T
ss147131157	ENSMUSSNP4572959	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28159963					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38308989	NES09511494	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102278565 () rs orientation: forward

Symbol	Name	Function Class
Pde4b	phosphodiesterase 4B, cAMP specific	within coordinates
Rr596241	regulatory region 596241	within coordinates
Tssr38034	transcription start site region 38034	181 bp upstream