rs28162367 SNP Detail

Summary

• ID
  rs28162367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107649079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATAATT CAGACAGAAA
  ATTATTCCCA ATTTAAAATT CTGTACCTGG CAAATTGTCA ATCAAATATG AAATACTTTT
  AGCATTGTGA GGCCCTTACG ATTTCACCTT AAGGACCCCT GTTCTAGCTG TTTTCTGTTG
  CTAACAACAG CACTGGGACA TTTTACTGGA GAGAGGTTTA TTTTGATTCA TGATTCTCAT
  Y
  CAAGGTCAAG GGCTGCATCT GGCAATGGCT TTCTTACTAG CAGAGTCCTC AGGCAATATG
  GGGCATCACG TGGTGAGAAC GTCCCTCTGG TCTCTCTCCT TATCATAAAG GTTCCAGGAT
  TCAAGCATGT AGGACCTCAT CCTGGCTCCC TTCTGATCTG TGTCATAAGC TCCCTTCGGA
  TCAAGATGTA GAACTCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38283302	NES09504809	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28162367					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283302	NES09504809	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107649079 () rs orientation: forward

Symbol	Name	Function Class
4933424M12Rik	RIKEN cDNA 4933424M12 gene	1960 bp downstream
Gm69341	predicted gene, 69341	within coordinates
Lrp8os3	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 3	1267 bp downstream