rs28163075 SNP Detail

Summary

• ID
  rs28163075
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108869246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAGCAG TTTTGGAAAC
  CTGTACAGTG TCAGATGCAT TTTGTAGAGG CAAAGCCGTA AGCTTATATT TGTGTGGTTG
  TGCTTTGGTG CTGACCTACC AAGGCTGCTT TGAAGATGAA GCGATGTTTT CCCAGGCTGT
  CTTCTATTTT GGTAGAATGC TAATTTCTAA ACTAAAGGAC TGGAAGAGGT GGTTGGTCAT
  S
  GGCTTCTAAA TTTTTAAAGA ATTGATTATT CATTAGTTGA GACAGGCGCC TTCCATGCTG
  TGTGTTCCAG GCTGTATTGA AACTCAGGAA CTGATGATCC TCTACCTCAG TCTTCCCAGT
  ACCAGGATAT CAGGCATGAA CATACACACT GGGGTGCCAT CAATGTCCAT TAATGTACAG
  ATGGCTTTTA TTTGGAGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279107	NES09529714	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163075					SNP	G	G	G	C	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279107	NES09529714	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108869246 () rs orientation: forward

Symbol	Name	Function Class
Nrdc	nardilysin convertase	within coordinates
Rr376993	regulatory region 376993	1746 bp downstream