rs28163098 SNP Detail

Summary

• ID
  rs28163098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108859556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAATTC TAGAGATCAT
  CTTTTCCACT TTCCCCCCAC TTCTGTTTTA CAAACAACTG ACACTCAGGT CCAGAAAGTA
  GTGACATAGT CCCAGCTTCA AGACTAGCTT AATTTCCCAG TATAATTTTT GTCAGTTTGT
  CAGGGTCAAG ATATCTTTAT AAACTAGGGA TAACTTTTCT TGCCAAAGAT GTAGTTGTAA
  Y
  CTGTAAGTGA GCAAGTTGAA GGTAATAACA TTGCTTAGTT TTGGCCTCCC AGGTTAAATT
  TTCAGTACAG GTGTTGGTGG TTTTTTTGTT TGTTTGTTTG TTGTTTTCCT GTCCATACAA
  AGTTACCTAA TAATGGCTAA GTCTCAGATA CTGTTCTGAT TGCTTCAGGT AGAGATTCGT
  TGACCTTATT TTTTGCTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279130	NES09530461	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163098					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279130	NES09530461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108859556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	1093 bp distal
Nrdc	nardilysin convertase	within coordinates
Rr99732	regulatory region 99732	within coordinates
Rr367667	regulatory region 367667	1668 bp downstream
Tssr38326	transcription start site region 38326	1653 bp downstream
Tssr38327	transcription start site region 38327	1495 bp downstream
Tssr38328	transcription start site region 38328	1450 bp downstream
Tssr38329	transcription start site region 38329	1434 bp downstream
Tssr38330	transcription start site region 38330	1358 bp downstream
Tssr38331	transcription start site region 38331	1294 bp downstream