rs28163100 SNP Detail

Summary

• ID
  rs28163100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108859206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGATAT CTTGGGCCTC
  AGTTGTATGA ATGGTAGGCG TGTAAGATCC CATTTTATAC AATGTTTCAA TCATGTGTAA
  TGAATGAATG AATGGTGACT CAATCCCCCA CCTGAATAAA CTTAAGAGTT ACTTTGTTTC
  ATAAAATATC TTGTATTTGA AATAGTTTCT ATTATCTTAC AGCTTAGTTT TCCTGGTTGA
  R
  GACGTTGAAA CACACTCAGA ATTAGACAGC TAAATAGTAT TGGAGCTTGT ATGAAACTAC
  CCATCCGACT CAAAAGCCAG TGCAGTATGT GCTGGGTTAG AAGCCTGCAG CTCCAAACTT
  ATTATAAGCC TGCAGTGTGT TAAAAGAAGG AAAGAATTCT AGAGATCATC TTTTCCACTT
  TCCCCCCACT TCTGTTTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279132	NES09530493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163100					SNP	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279132	NES09530493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108859206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	743 bp distal
Nrdc	nardilysin convertase	within coordinates
Rr99732	regulatory region 99732	within coordinates
Rr367667	regulatory region 367667	1318 bp downstream
Tssr38326	transcription start site region 38326	1303 bp downstream
Tssr38327	transcription start site region 38327	1145 bp downstream
Tssr38328	transcription start site region 38328	1100 bp downstream
Tssr38329	transcription start site region 38329	1084 bp downstream
Tssr38330	transcription start site region 38330	1008 bp downstream
Tssr38331	transcription start site region 38331	944 bp downstream