rs28163102 SNP Detail

Summary

• ID
  rs28163102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108858792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGCCCG GCTATTTTTG
  ACTTATATTA AAGCAAGAAT TAAGGTTTCC ATGAGGAAGA CAGGATGGAT GGTAAAGGGG
  AGGAGGGTTG GTAAGGAAAG CTTGACAGTT AGTGATTCTG AATTTTGGCG GAGAGGATAT
  TTGAGATGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTTAT TTTTGTTCAG
  Y
  CTCAATCCAA AGGTGTATGA GTAAAGAGAG GTAAAACAGA GTGAAAATTA CGAAAAGGAT
  GCTGTGGTTT TAATAAAAGA ACTTTACATC ACCCTTTTCG TAATTATCAC TCCTGTTTAC
  CTCTCTTAGC TAGCCTGAGA TGGAGTGGCT TGTAACCATG GGTAGCTAGC CACAACTAGA
  ATGGCTTAGC TAGATGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279134	NES09530488	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163102					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279134	NES09530488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108858792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	329 bp distal
Nrdc	nardilysin convertase	within coordinates
Rr99732	regulatory region 99732	within coordinates
Rr367667	regulatory region 367667	904 bp downstream
Tssr38326	transcription start site region 38326	889 bp downstream
Tssr38327	transcription start site region 38327	731 bp downstream
Tssr38328	transcription start site region 38328	686 bp downstream
Tssr38329	transcription start site region 38329	670 bp downstream
Tssr38330	transcription start site region 38330	594 bp downstream
Tssr38331	transcription start site region 38331	530 bp downstream