rs28163106 SNP Detail

Summary

• ID
  rs28163106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108857341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAAAA GCTTGGGAAA
  GTTACTTGAG GTTAGTAGCC TAACATGTTC TTGCTTTTCA GTAAAAGTTG GCCAAACTTA
  AAGGTAGGCT GAGGACTACT CCAGGGTGTG GAAGCTTAAA AAAATAAACA ATTCGCATAC
  AAGAGTGAGC ATATTGAAAC AGATCTGGAG CGTGAAAAGC ACCAATGGTT TGGCAGCCTA
  Y
  AGGATGGAAA GATGCAATTG TTATTTCCGG TGCTTAGTGA CCCACAAGCA CTGCATCCAT
  CTCGGGATAG GGTGGGAAAA GACTTCCGGT GCTCTGCTCT TTTAAAAAAG AGACCCGCTG
  AGTCACTCTA AGAATAGAGT GCAAAAAATA CACCGCAAGT GGGTGAAGAA GATCAGCATC
  CACTATCGCG ACTCACTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279138	NES09530562	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163106					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279138	NES09530562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108857341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	154 bp proximal
Gm55125	predicted gene, 55125	1438 bp upstream
Nrdc	nardilysin convertase	511 bp upstream
Rr99732	regulatory region 99732	within coordinates
Rr367667	regulatory region 367667	246 bp upstream
Tssr38326	transcription start site region 38326	462 bp upstream
Tssr38327	transcription start site region 38327	665 bp upstream
Tssr38328	transcription start site region 38328	754 bp upstream
Tssr38329	transcription start site region 38329	770 bp upstream
Tssr38330	transcription start site region 38330	846 bp upstream
Tssr38331	transcription start site region 38331	910 bp upstream