rs28163108 SNP Detail

Summary

• ID
  rs28163108
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108856173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTCATC ACTCCCAACT
  TCTGGCACAA GGTAGCACCT CACTTGGTTA GTTAAATGAA TGATGGAAAG TTCCACTCTA
  TGGAAAACCC AGCAAATTGC AATTAAGGGC ATAAATTATT TTTCTCCTTA GGAAAACAAA
  ATTGATAGTT GAAGCTGAAC GTTTCTTATT TCTGGTATTA TTGTTTTGGA GAGTCAAAAA
  K
  CACACCTAGA CTAATCCTGT ACAAAGCAAG CACACACACA CACACACACA CACACACACA
  CACACCCTAA TCTTGTACAA AGCATAGACT GACACTTCAG TGTCACTTAC TATTGGTGTT
  TTTATGTTCT GGGCAGCCAT TCTTGTACTG GAGAGACGCA AATGAAGCTA CTTTGAATGA
  GGACTCTAGT GGAGTTGCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279140	NES09530624	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163108					SNP	T	T	T	T	G	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279140	NES09530624	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108856173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	1322 bp proximal
Gm55125	predicted gene, 55125	270 bp upstream
Nrdc	nardilysin convertase	1679 bp upstream
Rr99732	regulatory region 99732	627 bp proximal
Rr367667	regulatory region 367667	1414 bp upstream
Tssr38326	transcription start site region 38326	1630 bp upstream
Tssr38327	transcription start site region 38327	1833 bp upstream
Tssr38328	transcription start site region 38328	1922 bp upstream
Tssr38329	transcription start site region 38329	1938 bp upstream