rs28163109 SNP Detail

Summary

• ID
  rs28163109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108856132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACTAGC CCTCTTCTAA
  GCTCTAGAGA GAGGGGACAT ATTTGCTCAT CACTCCCAAC TTCTGGCACA AGGTAGCACC
  TCACTTGGTT AGTTAAATGA ATGATGGAAA GTTCCACTCT ATGGAAAACC CAGCAAATTG
  CAATTAAGGG CATAAATTAT TTTTCTCCTT AGGAAAACAA AATTGATAGT TGAAGCTGAA
  Y
  GTTTCTTATT TCTGGTATTA TTGTTTTGGA GAGTCAAAAA TCACACCTAG ACTAATCCTG
  TACAAAGCAA GCACACACAC ACACACACAC ACACACACAC ACACACCCTA ATCTTGTACA
  AAGCATAGAC TGACACTTCA GTGTCACTTA CTATTGGTGT TTTTATGTTC TGGGCAGCCA
  TTCTTGTACT GGAGAGACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279141	NES09530623	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28163109					SNP	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279141	NES09530623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108856132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	1363 bp proximal
Gm55125	predicted gene, 55125	229 bp upstream
Nrdc	nardilysin convertase	1720 bp upstream
Rr99732	regulatory region 99732	668 bp proximal
Rr367667	regulatory region 367667	1455 bp upstream
Tssr38326	transcription start site region 38326	1671 bp upstream
Tssr38327	transcription start site region 38327	1874 bp upstream
Tssr38328	transcription start site region 38328	1963 bp upstream
Tssr38329	transcription start site region 38329	1979 bp upstream