rs28165008 SNP Detail

Summary

• ID
  rs28165008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109514322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAATGA AGAAGGTGTA
  TTTTCGGTTC CGGATGTCTA GTATACTACG GAGGAAAAGC AAAACCTTGG GGCAGTTTTG
  TGAACAGTCC AAGACGGTAA AAAGCCAGAG AAGAATTTGT CTTCTTAGCA GTTGGACGCC
  TGGCTGGGAA GCCCGGCTGT CCTCAGCTGT CATCGCCAGG GGAGGAAGGG AGAGCTACTC
  Y
  GAGTAGGGCA CCGAGTGGTG CAGCGCGCCC GCGGCTCCGG CCGCCAGCTC ACCTCCGCGG
  CCAGCCAGGA ACTCACCGGC CTGCTCTCCT CAGCTCGCGC ACTGCCCTCC AGCCGCAGCC
  CCGGGGCCAA CTTTACCCAG CGGGAGGGCT GCCCCGGGGC CAGCACCTGG AGCTGGCTGC
  TGTGGTCGCC CACAACTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38277245	NES09507858	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C		C	T	T
ss321254444	CHEV_4_109329730	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28165008					SNP	T	T	T	T	C	T	T	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277245	NES09507858	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109514322 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	within coordinates
Cpgi14575	CpG island 14575	within coordinates
Gm12811	predicted gene 12811	292 bp downstream
Rr597349	regulatory region 597349	within coordinates
Rr597350	regulatory region 597350	285 bp proximal
Tssr42773	transcription start site region 42773	585 bp upstream
Tssr42774	transcription start site region 42774	694 bp downstream