rs28165009 SNP Detail

Summary

• ID
  rs28165009
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109514188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAAAA AAGAGAAAAC
  CCACAAAAAA CAAAACAAAA AAACCAACCA ACCAAACAAA CAAACAAAAA ACCCCCATAA
  TCCTAGGTGT TCTGCACACC CCAGCCCTGA AGGTCACCGC TCAGGCTGGG GTCTTTTTGA
  ATGAAGAAGG TGTATTTTCG GTTCCGGATG TCTAGTATAC TACGGAGGAA AAGCAAAACC
  K
  TGGGGCAGTT TTGTGAACAG TCCAAGACGG TAAAAAGCCA GAGAAGAATT TGTCTTCTTA
  GCAGTTGGAC GCCTGGCTGG GAAGCCCGGC TGTCCTCAGC TGTCATCGCC AGGGGAGGAA
  GGGAGAGCTA CTCTGAGTAG GGCACCGAGT GGTGCAGCGC GCCCGCGGCT CCGGCCGCCA
  GCTCACCTCC GCGGCCAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38277246	NES09507857	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28165009					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277246	NES09507857	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109514188 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	within coordinates
Cpgi14575	CpG island 14575	37 bp proximal
Gm12811	predicted gene 12811	158 bp downstream
Rr597349	regulatory region 597349	within coordinates
Rr597350	regulatory region 597350	419 bp proximal
Tssr42773	transcription start site region 42773	451 bp upstream
Tssr42774	transcription start site region 42774	828 bp downstream