rs28165017 SNP Detail

Summary

• ID
  rs28165017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109512765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTCTAG CTCTTTAAGA
  TGATTATATT TATTCAGACA CGTTCCATAC CTCGACAAAG GAAGAAATGC ATGTCATTTT
  TAAGTGGCCC ACAGATTGGT CCAAGGTGTC TAACTGTATG CACATCAGTG AGGGCATCAA
  TTTTTCTAAA TGAAACCATC TCAGAAGATA GCTATGTGAT AGGAATTATC TGGGCTCGAA
  Y
  AGGAGACCGA TTATGCAGTC TGGTGAGAGA AGGTACTGAT ACCACTGATC ATGATGCCAA
  TTGGGAGAAC TGTTCCTGGA GCCCAGAAAG CTTCTTTTTT CTTTTTTAAT TTTAGGAAGT
  TGTGTTTCCA AAGCACACAT TTAAAACTCA TAACAGACCT CTTTTCCAGC AAGTGTACAC
  ACTACACTGA GCAGGATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38277254	NES09507970	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C	C		T	C	C		T
ss321254442	CHEV_4_109328173	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28165017					SNP	C	C	C	T	C	T	C	C	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277254	NES09507970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109512765 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	within coordinates
Cpgi14575	CpG island 14575	1460 bp proximal
Gm12811	predicted gene 12811	within coordinates
Rr597349	regulatory region 597349	899 bp proximal
Rr597350	regulatory region 597350	1842 bp proximal
Tssr42773	transcription start site region 42773	958 bp downstream