rs28165019 SNP Detail

Summary

• ID
  rs28165019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109511993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAATTGT TTTGAAAAAC
  CACAAATTAC TTCCAAGATG TTCCTAGATC TTGATTTTAC ACTTAAAAAA TTAGTAGCAT
  ATGTAAAATA TTAAGTACTT TTTGCATTCC AAGTTATATT CAAGACATAA ATGCACTATT
  GCTGCGACTT CGTGTCCAGA CTTCTTGACT TTTACCTTCA CTTCTGAAAA AATGCAGACC
  R
  AGGCTTTTAC TCATAGGCCC AGGGTAAATT TGTAGTTGTG GGACTAACAA CTACTATTTA
  GCATCACTGA GTATAATTTT TAAAGTTCAA GTAATTTTTA GGAATGGGGA AAGAGACAGC
  TGAGGAAGGA GGAATTTTTT AAAACATGGG CCTCTCTACC TACATGCTAT CTTTTTGTTG
  TTATTGTTCA TTACCCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38277256	NES09507968	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28165019					SNP	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277256	NES09507968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109511993 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	within coordinates
Gm12811	predicted gene 12811	within coordinates
Tssr42773	transcription start site region 42773	1730 bp downstream