rs28165020 SNP Detail

Summary

• ID
  rs28165020
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109511980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTAAGA TGTATTAAAT
  TGTTTTGAAA AACCACAAAT TACTTCCAAG ATGTTCCTAG ATCTTGATTT TACACTTAAA
  AAATTAGTAG CATATGTAAA ATATTAAGTA CTTTTTGCAT TCCAAGTTAT ATTCAAGACA
  TAAATGCACT ATTGCTGCGA CTTCGTGTCC AGACTTCTTG ACTTTTACCT TCACTTCTGA
  W
  AAAATGCAGA CCAAGGCTTT TACTCATAGG CCCAGGGTAA ATTTGTAGTT GTGGGACTAA
  CAACTACTAT TTAGCATCAC TGAGTATAAT TTTTAAAGTT CAAGTAATTT TTAGGAATGG
  GGAAAGAGAC AGCTGAGGAA GGAGGAATTT TTTAAAACAT GGGCCTCTCT ACCTACATGC
  TATCTTTTTG TTGTTATTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38277257	NES09507967	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	T	A	A	T		T	A	T		T
ss321254441	CHEV_4_109327388	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28165020					SNP	A	A	A	T	A	T	T	A	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277257	NES09507967	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109511980 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	within coordinates
Gm12811	predicted gene 12811	within coordinates
Rr597349	regulatory region 597349	1684 bp proximal
Tssr42773	transcription start site region 42773	1743 bp downstream